University of Wisconsin–Madison



Why Test?

Did you know that there are a number of reasons to test your animals for Johne’s disease? And that there are times when testing for MAP (the organism that causes Johne’s disease) may not be needed? The best test for your cattle depends on what the information will help you accomplish.

Diagnostic testing can help:

  1. Determine whether or not MAP is present in your herd.
  2. Estimate the extent of MAP infection in a herd, called the within-herd prevalence.
  3. Control MAP in a herd that is know to be infected.
  4. Make a diagnosis for an animals showing clinical signs typical of Johne’s disease.
  5. Discover if MAP is present in the farm environment.
  6. Meet pre-purchase or shipping testing requirements.

Once your veterinarian knows the reason(s) you want to test for Johne’s disease, s/he can tailor a diagnostic plan that best meets your needs. This plan should outline the type of test, when to test, which animals to focus on, the cost of testing, how to interpret the results and what actions to take based on test results.

For any of these diagnostic assays, it is best if and your veterinarian use a laboratory that has voluntarily taken (and passed!) an annual “proficiency test” to confirm that their methods are valid. The list of laboratories that have passed the US proficiency test for Johne’s disease can be found here. Note: labs are listed by type of test – not all laboratories perform every test. The link below lists labs approved for: 1) Serology (antibody-detection tests), 2) organism-based methods (PCR or culture), and 3) tests that use sample pooling.

Which Test Should I Use?

The two primary types of diagnostic tests look for either the organism that causes Johne’s disease (MAP, Mycobacterium avium subspecies paratuberculosis) or the animal’s response to infection by MAP (antibody in the blood).

Organism-detection based tests.

There are two types of these assays:  (1) PCR, which looks for the MAP genetic material from living or dead MAP, and (2) Culture, which isolates the living MAP organism itself from manure, tissue or environmental samples. PCR has largely replaced culture as the most accurate and affordable way to detect MAP.

1. PCR, also called direct PCR: This test is used on manure or tissue samples. The assay looks for MAP’s genetic material instead of the living organism. Most labs provide a result in 7-10 days. The accuracy of culture and PCR are comparable and PCR is faster and less expensive.

Pooling of samples (5 per pool with pooling done by the testing lab) is the most accurate and affordable way to test your herd if you have a low or zero prevalence of infection. Request “Direct PCR (pooled)” on the submission form and list your animals on the submission form in the order by decreasing age (oldest first). This insures that the pools are created with the maximum likelihood of having the MAP-infected animals in the same pool.

Paraffin block PCR is a special form of PCR that only some laboratories perform. When tissues are collected at a necropsy, they are embedded in paraffin to be thin-sectioned, stained and examined microscopically. The pathologist is looking for damage to the tissues and for MAP itself within cells. Your veterinarian can request a PCR test on a portion of the paraffin block.

Most labs also use a PCR to confirm that the organism isolated during culture is actually MAP vs. one of its closely-related cousins.

2. Culture:

Conventional culture of MAP from fecal samples on HEY media. MAP colonies on the left. Control medium on the right.

A sample submitted for culture is monitored for eight weeks or longer because MAP is a very slow growing organism. If the sample is heavily contaminated with MAP, a positive result may be had sooner, but it can take two months of incubation or more until the lab feels confident that no MAP organisms are present and can report a “culture negative” result. Culture is effective for testing any animal species (manure or tissue samples). Pooling of manure samples reduces the cost of a herd test. Individual samples are collected, then the laboratory mixes the samples (usually 5 samples per pool, 1 pool per culture). If a pool is test positive, the 5 animals contributing to the pool are then tested individually to find which one(s) are shedding MAP. Older culture methods used solid culture media that were examined visually on a weekly basis for at least 3 months. Newer methods use liquid culture media and automated instruments to “read” the culture for up to 8 weeks.

Antibody tests on blood samples.

These assays look for antibody produced by an infected animal using a technology called ELISA (enzyme-linked immunosorbent assay).


Blood samples in serum separator tubes showing the clear serum above the clotted red blood cells.

To perform this test, 2-3 milliliters of blood is collected from an adult animal. The fluid part of blood samples (serum) is tested for anti-MAP antibody. The amount of antibody found (if any) is compared with positive and negative controls, and an interpretation is then assigned to the ELISA result. These numeric results (the actual amount of antibody) are useful: the higher the test result, the greater the certainty that the animal is infected and shedding MAP.

The ELISA is designed for testing large numbers of samples quickly (a few days) and this makes it a low-cost test. A number of ELISA kits have been approved for use in milk from individual cows as well as blood samples.

ELISAs are popular because they are fast and the least expensive of the available tests for Johne’s disease. However, they are designed for rapid, low-cost screening of large number of animals. ELISAs are less sensitive than MAP-detection assays (PCR and culture), detecting roughly one-third of the animals that MAP-detection assays will identify as MAP-infected. This is generally because antibody production occurs later in the course of a MAP infection, months or even years after an infected animal has been passing MAP bacteria in its feces.

ELISAs are >99% specific. This means that there is a <1% chance that a positive ELISA is a false-positive. Typically, this means that animals found ELISA-positive should have a confirmatory test done by PCR or culture.

There are many nuances to testing recommendations, particularly related to dairy cattle and use of milk ELISAs. All of these nuances cannot be explained here. The best advice is to discuss your specific needs for Johne’s disease testing with your veterinarian.

When and which animals to test.

Test adult animals. Due to the biology of MAP infection, only adult cattle (18 months and older) produce the targets needed by diagnostic tests. That is, calves are infected while very young but they do not shed the organism with any frequency (so the organism detection assays will be negative) nor do they produce antibody (so the blood/milk tests will be negative). That is why it is recommended that diagnostic tests be used only for animals at least 18 months old.

Recommended testing approaches.

There are a variety of ways to test your herd that will give you the information that you need. The best testing program can be developed by you and your veterinarian since you know your operation best: its goals, resources, other animal health issues, etc.

Here are some approaches that have worked well for other beef cattle owners.  Think about what you are trying to accomplish and then look at our recommendations:

1. Is MAP present in my herd?  Options for testing:

  • Targeted testing (ELISA or fecal culture) of oldest or thinnest cows (10% or more of the herd).
  • Whole herd test.  You can save money by only testing cattle 3 years and older.
  • Culture or PCR on 5-10 environmental fecal samples collected where cattle concentrate such as around feeders or waterers.


2. What percentage of my cows are MAP-infected?  Options for testing:

  • A good estimate can be made by blood testing (ELISA) all cows that have calved twice or more.
  • If you are confident the infection rate is low, PCR on pooled fecal samples is a good choice.


3. What test should I use to control MAP in my infected herd?  Options for testing:

  • Blood testing (ELISA) on cows that have calved twice or more.
  • PCR on individual culture that have calved twice or more.
  • Test clinically ill (thin or with diarrhea) cattle. See the Control section for further information.


4. What test should I use to eradicate Johne’s disease in my herd?  Options for testing:

  • PCR on all cattle 18 months and older one month before calving season with all PCR-positive animals either culled or segregated well away from the main herd. Repeated annually until three negative tests are achieved on the herd.


5. Does this skinny cow have Johne’s disease? (Making a diagnosis for a sick cow: weight loss, diarrhea)  Options for testing:

  • PCR on a manure sample if previous cases have been seen in the herd.
  • Necropsy.  This has the advantage of helping to discover any and all possible causes of illness, not only Johne’s disease. Tissues should be collected and submitted to a diagnostic laboratory for histopathology and PCR (ileum and mesenteric lymph nodes).


6. What test should I do before buying or leasing an animal?  Options for testing:

  • This is usually negotiated between the buyer and seller.
  • Occasionally local regulations made specify the type of test.
  • From the seller’s perspective a single low-cost low-sensitivity test only only the specific animal(s) involved is preferred, i.e. ELISA on a blood sample (a negative test is more likely).
  • From the buyer’s perspective, a negative whole-herd test using the most sensitive test (PCR on manure samples from individual cows) is preferred as this maximizes likelihood the any animal from the herd is not MAP-infected.

Regardless of which cows you test or which samples you collect, PLEASE package them with care! 

Excellent shipping information is found on this WVDL page.

To make my point, below are some examples of what poorly packaged samples look like when they get to the laboratory.

Snap top tubes pop open when fecal samples ferment producing gas in transit to the lab causing cross-contamination of samples making it very hard to reliably test them.

Without sufficient packing material glas tubes will break in transit to the lab.

Submission forms accompanying the samples should be in a separate sealed plastic bag to insure it is readable on arrival to the lab.